Annual PI Meeting for the Innovative Molecular Analysis Technologies (IMAT) Program (Active Projects)

Active Projects

 

R33CA291301 Jungwoo Lee Develop and validate demineralized bone paper-based human bone metabolic and senolytic assays
R61CA291117 Elisa Biondi Evolved Molecules that Destroy Cancer Relevant Proteins
R33CA272339 John Yates III 3D Proteomics at Single Cell Resolution with Covalent Protein Painting (CPP)
R33CA287046 Ji-Xin Cheng Bio-orthogonal Mid-Infrared Photothermal Imaging of Cancer Metabolism
R33CA291185 Darryl Bornhop Quantification of molecular interactions across the matrix spectrum enables cancer research
R61CA287408 Yanxiang Deng Spatially resolved multi-omics sequencing of FFPE tissues at cellular level
R61CA291201 Jeffrey Ishizuka Multiplexed, Continuous Reporting of Gene Expression via CRISPR-mediated Transcriptional Activation
R61CA291212 Sapun Parekh; James Tunnell Precision Tumor Sampling of Melanoma Using Laser Microbiopsy
R61CA291202 Huiqing Jane Zhou; Jia Niu Development of A Directed Evolution Platform for RNA Methyltransferases.
R33CA291199 Fei Chen A platform for multi-modal single nucleus spatial genomics for molecular tumor analysis
R33CA291197 Ahmet Coskun Spatial protein-protein interaction networks in situ by multiplexed proximity ligation
R33CA291125 Tania Tali Konry Microphysiological platform for analyzing multiple myeloma's tumor microenvironment enabling immunotherapy assessment and drug screening.
R33CA287135 David Issadore High Throughput Digital Droplet Assays for Ultrasensitive Multimodal (DNA RNA and Protein) Diagnostics
R61CA287026 Wilhelm Haas; Lecia Sequist A Real-Time AI-Driven High-Throughput Proteomics Data Acquisition Method for Clinical Applications
R33CA281919 Gloria Sheynkman; Stephen Yi An integrated functional proteomics platform for accelerated discovery of isoform-specific determinants of cancer
R33CA281918 Li Ye; Benjamin Cravatt A platform to identify in vivo targets of covalent cancer drugs in 3D tissues
R33CA281875 Yevgeny Brudno MASTER Scaffolds for Rapid, Single-Step Manufacture and Prototyping of CAR-T cells
R61CA281807 Nir Hacohen Development of methods for highly multiplexed quantification of cancer proteomes using large-scale nanobody libraries
R33CA281802 Joshua Labaer Multiplex In-Solution Protein Array (MISPA) for high throughput, quantitative, early profiling of pathogen-induced head and neck
R61CA281795 Paul Campagnola; Filiz Yesilkoy A novel multimodal ECM analysis platform for tumor characterization combining morphological and spectrochemical tissue imaging approaches.
R33CA281794 Hyungsoon Im Nano-CRISPR extracellular vesicle sensing system for longitudinal tumor monitoring
R61CA281785 Parijat Bhatnagar Bioreactor for Manufacturing Chemotactically Competent Immune Cell Therapies
R33CA281702 Sidi Chen Advanced development of composite gene delivery and CAR engineering systems
R61CA281667 Facundo Fernandez Triboelectric Ambient Mass Spectrometry Imaging of Renal Cell Carcinomas
R61CA281657 Gary Luker Integrated Imaging Tools for Intercellular Chemokine Signalling
R33CA281602 Katherine Meyer A High-Throughput Screening Platform to Discover RNA Methylation Inhibitors
R33CA278564 Joshua Breunig Enabling in vivo barcoded single-cell multiomics-compatible genome-wide screens in personalized tumor models using defined-copy somatic transgenesis
R61CA278559 Yue Lu Vesicle Epitope Transcript sequencing (VET-seq): Droplet-based Multiomic Profiling Platform for Single Vesicle Analysis
R61CA278558 Hao Yan; Rizal Hariadi High-throughput purification-free and ultrasensitive transmembrane nanosensor arrays for digital counting of microRNA biomarkers of intact exosomes
R33CA278551 David Issadore; Erica Carpenter Combining Machine Learning and Nanofluidic Technology for The Multiplexed Diagnosis of Pancreatic Adenocarcinoma
R33CA278544 Richard Levenson CoreView and FIBI for rapid-onsite evaluation and molecular profiling of core-needle breast biopsies.
R61CA278536 Paul Clark Blainey Profiling and perturbing the inheritance of drug-induced metabolic states in cancer with Inheritance-Seq
R61CA278531 Venktesh Shirure Microfluidic technology to isolate tumoricidal T-cells from peripheral blood
R61CA278518 Torsten Wittmann Quantitative analysis and manipulation of chromosome dynamics in cancer organoids
R33CA278510 Eric Duncavage; David Spencer A Rapid and Comprehensive Approach for Clinical Genomic Profiling in Lung Cancer
R61CA278503 Philipp Oberdoerffer Proximity epigenomics for context-specific analysis of complex chromatin features
R33CA278469 Hanlee Ji Single cell modeling of cancer mutations
R61CA278459 Guillem Pratx A Novel Assay to Individualize Resensitization of Iodine-Refractory Thyroid Cancer
R61CA278458 Robert Rostomily; Francois St-Pierre A multiplexed high-throughput platform to report pharmacologic alteration of cancer stem cell membrane potential and cell cycle state
R61CA278452 Neel Shah A Generalizable Photo-Crosslinking Strategy to Identify Tyrosine Phosphatase Substrates
R61CA278450 Sarah Heilshorn Tumor Metabolic Profiling by Multiplexed Single-Cell Lipid and mRNA Imaging
R61CA278449 Jarrod Marto; Justin Kim New Chemical Tools for Covalent Drug Discovery
R61CA278445 Soma Dhakal Single-Molecule High-Confidence Detection of miRNA Cancer Biomarkers
R33CA278429 Jonathan Schneck Identification of cancer neoepitope-specific T cells using novel high-throughput hydrogel based platforms
R61CA278402 Jose Javier Bravo-Cordero Intersectional genetics-based biosensors for dormant cancer cells
R61CA278398 Xiaojing Gao; Monte Meier Winslow Program the Immune System against RAS-driven Cancer
R33CA278393 Peter Van Galen; Vijay Ganesh Sankaran Clonal analysis of cancer by mitochondrial DNA barcoding
R33CA278392 Allon Klein; Linas Mazutis Micro-capsules for versatile multiplexed cytometry
R33CA277820 Ralph Weissleder Bioorthogonal probe development for highly parallel in vivo imaging
R33CA272357 Tao Pan; Bruce Bissonnette; Benjamin Shogan Transfer RNA sequencing and application to cancer research and clinics
R21CA272351 Steven Soper Molecular Sub-typing Breast Cancer Patients Using a Liquid Biopsy
R21CA272345 David Knowles A CRISPR/Cas13 approach for identifying individual transcript isoform function in cancer
R33CA272339 John Yates III 3D Proteomics at Single Cell Resolution with Covalent Protein Painting (CPP)
R33CA272331 Joseph Muretta; Wendy Gordon Engineering Protein Modulators of Notch Activation for T-cell immunotherapy
R21CA272326 Ryan Kelly In-depth and label-free proteome profiling of hundreds of single cells per day
R33CA272321 Tza-Huei Jeff Wang; Thomas Pisanic II A low-cost, multiplexed digital high resolution melt platform for DNA methylation-based detection and identification of cancers in liquid biopsies
R33CA272271 Brian Cunningham; Aaron Mansfield; Xing Wang Rapid simple and ultrasensitive quantitation of KRAS ctDNA at the point of care using CRISPR/Cas amplification and digital resolution biosensor microscopy
R21CA272014 Stephen Salipante Efficient cost-effective and ultrasensitive sequencing of somatic mutations
R21CA269103 Paul Clark Blainey Stitch-seq for genome-wide pooled genomic screening with RNA-seq readout
R33CA269100 Brian C-H Chiu; Wei Zang A highly sensitive linear amplification based DNA methylation profiling technique for clinical cancer research
R21CA269099 Vladislav Yakovlev; Mikhail Berezin Molecular and cellular imaging of bone biopsies using AI augmented deep UV Raman microscopy
R33CA269094 Raymond Moellering Single-Cell Protein Activity Profiling in Breast Cancer Cells and Tissues
R21CA269091 Chad Borges Plate reader assays to forensically assess exposure of plasma and serum to thawed conditions
R33CA269015 Andrew Adey Accessible high-throughput single-cell genome sequencing
R21CA267260 Bruce Armitage; Huaiying Zhang Fluorescent gammaPNA Miniprobes for Imaging Telomeric RNA
R33CA267258 Abraham Lee; Anshu Agrawal Microfluidic Precision Engineered Artificial Antigen Presenting Cells for Cancer Immunotherapy
R21CA267245 Darryl Shibata Photolithographic Tumor DNA Isolation
R33CA267226 Richard Drake Targeted Isolation and Identification of Sialylated Glycoproteins in Cancer Tissues Cells and Biofluids
R21CA267222 Hakho Lee 3D Fourier Imaging System for High Throughput Analyses of Cancer Organoids
R33CA267221 Thomas Norman; Scott Lowe Systematic characterization of cancer variants using single-cell functional genomics
R33CA267219 Dan Landau Expanding the GoT toolkit to link single-cell clonal genotypes with protein, transcriptomic, epigenomic and spatial phenotypes
R21CA267012 Joshua Snyder Mouse Paint: A massively combinatorial approach for illuminating tumor heterogeneity in True Color
R21CA263147 Rohit Bhargava Spectroscopy Assisted Laser Microdissection
R21CA261775 Qiao Lin A Practical Approach to Tumor-Specific Aptamers for B-Cell Hematologic Malignancies
R21CA261737 Sarah Hainer; Yi Shi Using nanobodies to increase the sensitivity and resolution of chromatin profiling through uliCUT&RUN
R21CA261734 Alptekin Aksan Novel cryopreservation method for stabilization of manufactured therapeutic cells
R33CA261726 Ji-Xin Cheng Mapping Cancer Metabolism by Mid-infrared Photothermal Microscopy
R33CA261696 Sofia Merajver; Jianping Fu Advanced development and validation of an in vitro platform to phenotype brain metastatic tumor cells using artificial intelligence
R21CA261643 Sindy Tang A micro-dissection platform for generating uniform-sized patient-derived tumor organoids (PDOs) for personalized cancer therapy
R21CA261642 Alexandra Naba, Yu Gao Enhanced mass-spectrometry-based approaches for in-depth profiling of the cancer extracellular matrix
R33CA259451 Kristen Naegle A synthetic toolkit for the recombinant production of tyrosine phosphorylated proteins and peptides
R21CA258019 Kai Chen; Charles McKenna Novel Bisphosphonate PET Probes for Myeloma Bone Disease
R33CA258016 Xuefeng Liu Validating Urine Derived Cancer Cells (UDCC) -- Non-Invasive and Living Liquid Biopsies -- in Bladder Cancer Clinics
R21CA258013 Shivani Nautiyal Device for Preservation of Cell Free RNA in Saliva
R33CA258012 Andrei Karginov; Jalees Rehman Optogenetic Control of Tumor Initiation and Tumor Progression in vivo
R21CA258008 Giuliano Scarcelli; Konstantinos Konstantopoulos; Stuart Martin Stimulated Brillouin Flow Cytometry for biomechanical assessment of metastatic potential
R21CA257980 Ron Weiss; Carlo Maley A cell-cycle induced genetic recorder for simultaneous recovery of cell divisions and lineage
R21CA257942 Summer Gibbs A Novel Fluorescence Imaging Platform to Predict Response to Combinatorial Tyrosine Kinase Inhibitors
R33CA257878 Anders Hansen Super-resolution microscopy for dynamic analysis of focal enhancer amplifications in cancer
R21CA257864 Alan Boyle High-throughput inverted reporter assay for characterization of silencers and enhancer blockers
R21CA257816 Christopher Counter Adapting K-MDS to detect KRAS-mutant ctDNA
R21CA256128 Michael Deininger A Bioluminescent Assay for Direct Measurement of Sirtuin Activity in Cancer Cells
R33CA256112 Wei Wei Liquid biopsy-based toolkits for neoantigen and cognate TCR discovery for cancer immunotherapy
R33CA256102 Joel Greenberg Multimodality X-ray transmission and diffraction scanner for molecular analysis of cancer specimens
R33CA256086 Ning Jenny Jiang; Amy Brock A streamlined high-throughput platform for validation of cancer antigen presentation and isolation of cancer antigen reactive T cells
R21CA256082 Liron Bar-Peled Chemical Proteomic Identification of Druggable Oncogenic Transcription Factors
R21CA255979 Vladimir Didenko In situ assay imaging nuclear RNA exosome activity for cancer studies
R33CA252158 Yong Zeng; Liang Xu Integrative Functional Profiling of Tumor-Derived Extracellular Vesicles
R21CA251043 Shuichi Hoshika High Quality Proteins with Multiple Post Translational Modifications
R21CA251027 Rebecca Schulman Secretion responsive Hydrogels for Identification of Functional single T cells (SHIFT)
R21CA250999 Chad Borges Aliquot-level visual indicators of biospecimen exposure to thawed conditions
R33CA247700 Hanlee Ji Multimodal iterative sequencing of cancer genomes and single tumor cells
R33CA246448 Adam Hall Detecting diverse nucleic acid biomarkers of cancer with solid-state nanopores
R21CA240185 Wei Li Fractionation and Profiling of Heterogeneous Circulating Tumor Cells Using a Hyperuniform- Structured Microchip
R21CA236665 Maria Santore Paper-based Breastmilk Collection System for Facile In-Home Use
R33CA225549 Hossein Tavana; Gary Luker A High Throughput Human Tumor Modeling Technology for Cancer Drug Discovery
R21CA225493 Muneesh Tewari; Nils Walter Highly specific, amplification-free, single-molecule counting of rare methylated DNA cancer biomarkers
R21CA251052 Gennady Shvets Phenotypic assay for drug discovery and personalized medicine based on real-time vibrational spectroscopy enhanced by plasmonic metasurfaces