CPTAC Scientific Symposium- public (Agenda)




WELCOME (11:00 a.m. – 11:20 a.m.)
11:00 a.m. - 11:20 a.m. CPTAC Status Update
Henry Rodriguez, Ph.D., M.B.A.
National Cancer Institute, NIH
SESSION I - Tumor Characterization (11:20 a.m. - 12:50 p.m.)
11:20 a.m. -11:50 a.m. Proteogenomic Characterization of Pancreatic Ductal Adenocarcinoma
Hui Zhang, Ph.D., Johns Hopkins School of Medicine
11:50 a.m. - 12:20 p.m. A Proteogenomic Portrait of Lung Squamous Cell Carcinoma
Michael Gillette, M.D., Ph.D., Broad Institute
12:20 p.m. - 12:50 p.m. Proteogenomic and Metabolomic Characterization of Human Glioblastoma
Milan G. Chheda, M.D., Washington University School of Medicine
12:50 p.m. - 1:30 p.m Lunch
SESSION II - Translational Studies (1:30 p.m. - 2:15 p.m.)
1:30 p.m. - 2:00 p.m. Evolution of Resistance to FLT3 Inhibitors in AML, a Comparison of Gilteritinib And Quizartinib
(Partnership with BEAT AML Master Clinical Trial)

Elie Traer M.D., Ph.D., Oregon Health & Science University
2:00 p.m. - 2:15 p.m. Development of Targeted Proteomics Assays to Aid Immunotherapy in Cancer
Jeff Whiteaker, Ph.D., Fred Hutchinson Cancer Research Center
SESSION III - Data Analysis Tool (2:15 p.m. - 3:50 p.m.)
2:15 p.m. - 2:30 p.m. An Updated Overview of CPTAC Analysis Tools
Bing Zhang, Ph.D., Baylor College of Medicine
Live Demo-  
2:30 p.m. - 2:50 p.m. FragPipe Computational Pipeline
Alexey I. Nesvizhskii, Ph. D., University of Michigan
2:50 p.m. - 3:10 p.m. ProTrack-Kinase Activity Portal: A Tool to Query/Visualize/Download Kinase Activity Scores of Multiple Cancer Types
Anna Calinawan, Icahn School of Medicine at Mount Sinai
3:10 p.m. - 3:30 p.m. BayesDebulk: A New Deconvolution Analysis Method to Infer Cell-Type Composition in Bulk Tissue Using Proteogenomic Data
Francesca Petralia, Ph.D., Icahn School of Medicine at Mount Sinai
3:30 p.m. - 3:50 p.m. Deep Learning-Based Retention Time Prediction for Modified Peptides
Bo Wen, Baylor College of Medicine
3:50 p.m. Adjourn