ITCR 2025 Annual Meeting (Abstract Submissions)

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34 submissions
# Created User IP address First Name Middle Initial Last Name Degree(s) Position/Title/Career Status Organization Email Other (Please Specify) Abstract Category Abstract Title Upload Abstract Operations
34 Mon, 06/30/2025 - 11:36 Anonymous 10.208.28.203 Daniel Clarke B.S. M.S. Data Science Analyst Ma'ayan Lab, Icahn School of Medicine at Mount Sinai daniel.clarke@mssm.edu Poster Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows
33 Sun, 06/29/2025 - 15:40 Anonymous 10.208.24.93 Kooresh I Shoghi Ph.D. Professor of Radiology Washington University School of Medicine shoghik@wustl.edu Poster Preclinical Imaging XNAT-Enabled Informatics (PIXI): An open-source resource to support cloud-based computational workflows for preclinical imaging
32 Sun, 06/29/2025 - 14:26 Anonymous 10.208.28.213 Tin C Nguyen PhD Associate Professor Auburn University tinn@auburn.edu Poster Intelligent Platform for Systems-level Analysis
31 Sun, 06/29/2025 - 00:39 Anonymous 10.208.24.101 Leyla Rasheed Undergraduate Student Summer Trainee Ma'ayan Lab, Icahn School of Medicine at Mount Sinai leyla.rasheed@mssm.edu Poster Testing Cell Marker Augmentation Strategies for Cell Type Annotations in scRNA-seq
30 Sat, 06/28/2025 - 23:14 Anonymous 10.208.28.160 Ido Diamant B.S. Bioinformatics Software Engineer Ma'ayan Lab, Icahn School of Medicine at Mount Sinai ido.diamant@mssm.edu Poster ARCHS4: Uniformly Processing, Serving, and Mining All the Human and Mouse RNA-seq Transcriptomics Datasets from the Gene Expression Omnibus
29 Sat, 06/28/2025 - 17:29 Anonymous 10.208.28.160 Erol Evangelista BS and MS in Computer Science Bioinformatician Ma'ayan Lab, Icahn School of Medicine at Mount Sinai johnerol.evangelista@mssm.edu Poster lncRNAlyzr: Enrichment Analysis for lncRNA Sets
28 Sat, 06/28/2025 - 13:07 Anonymous 10.208.24.212 Rachel Karchin M.S., Ph.D. Professor JOHNS HOPKINS UNIVERSITY karchin@jhu.edu rachel.karchin@gmail.com Poster Using variant effect predictors calibrated for clinical classification in OpenCRAVAT and CIViC
27 Fri, 06/27/2025 - 17:11 Anonymous 10.208.28.84 Mitchell Shiell M.Sc Product Manager Ontario Institute for Cancer Research mshiell@oicr.on.ca Poster Overture Prelude A toolkit for small teams with big data problems
26 Fri, 06/27/2025 - 15:42 Anonymous 10.208.24.210 Yen-Yi Ho Ph.D. Associate Professor University of South Carolina hoyen@stat.sc.edu Poster scCOSMiX – A Mixed-Effects Framework for Differential Coexpression and Transcriptional Interactions Modeling in Single-Cell RNA-Seq
25 Thu, 06/26/2025 - 01:12 Anonymous 10.208.28.5 Abinanda Prabhakaran B. S. Masters Student Ma'ayan Lab, Icahn School of Medicine at Mount Sinai abinanda.prabhakaran@icahn.mssm.edu Poster X-Digest: A Web Platform for Exploring How Popular Bioinformatics Tools and Databases are Used by the Community
24 Mon, 06/23/2025 - 14:46 Anonymous 10.208.24.253 Lincoln Wu B.S. University of Pennsylvania lincolnwu18@gmail.com Poster ImmunoPheno: A Data-Driven Bioinformatics Platform for the Design and Analysis of Immunophenotyping Experiments
23 Tue, 06/17/2025 - 13:03 Anonymous 10.208.28.250 Fuyong Xing PhD University of Colorado fuyong.xing@cuanschutz.edu Poster Deep Learning-Based Generalizable Lesion Identification in Cross-Scanner PET Images
20 Mon, 06/09/2025 - 22:47 Anonymous 10.208.24.225 Ido Diamant BS in Biomedical Engineering, Minor: Computer Science Bioinformatics Software Engineer Ma'ayan Lab, Icahn School of Medicine at Mount Sinai ido.diamant@mssm.edu avi.maayan@mssm.edu Trainee Talk ARCHS4: Serving Massively Mined Uniformly Processed Human and Mouse RNA-seq Transcriptomics
21 Mon, 06/09/2025 - 22:35 Anonymous 10.208.24.225 Henri Schmidt M.S., B.S. PhD Student Princeton University henri.schmidt@princeton.edu Trainee Talk Regression Based Approaches to Bulk Tumor Phylogeny Inference
19 Mon, 06/09/2025 - 22:11 Anonymous 10.208.24.225 Yi Lian Ph.D. Postdoctoral Fellow Qi Long Lab/University of Pennsylvania yi.lian@pennmedicine.upenn.edu Trainee Talk Federated Multiple Imputation for Multicenter Studies Using Random Forests: Robust to Model Misspecification and Easy to Apply
18 Mon, 06/09/2025 - 21:27 Anonymous 10.208.24.225 Anna I Byrd MEng in Computer Engineering; BE in Biomedical Engineering; BA in Engineering Sciences Bioinformatics Software Engineer Ma'ayan Lab, Icahn School of Medicine at Mount Sinai anna.byrd@mssm.edu avi.maayan@mssm.edu Trainee Talk ChEA-KG: Human Transcription Factor Regulatory Network with a Knowledge Graph Interactive User Interface
17 Mon, 06/09/2025 - 21:19 Anonymous 10.208.28.229 Daniel J. B. Clarke BS, MS in Computer Engineering and Electrical Engineering Data Science Analyst III Ma'ayan Lab, Icahn School of Medicine at Mount Sinai daniel.clarke@mssm.edu Trainee Talk A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets
22 Mon, 06/09/2025 - 17:52 Anonymous 10.208.28.229 Clover Zheng Ph.D. (in progress) Graduate Student, 4th Year in Dr. Benjamin Raphael's Lab Princeton University sz6116@princeton.edu Trainee Talk Modeling Spatial Transcriptomic and Metabolic Variation Using Interpretable Neural Representations
16 Mon, 06/09/2025 - 17:28 Anonymous 10.208.28.229 Gabriela Salazar Lopez MS PhD Student University of Virginia czp5kq@virginia.edu Trainee Talk Expanding coverage for protein-kinase-activity-inference tool KSTAR using an alternative kinase-substrate network
15 Mon, 06/09/2025 - 16:04 Anonymous 10.208.24.225 Taylor Head Ph.D., MSPH Postdoctoral Fellow UT MD Anderson Cancer Center sthead@mdanderson.org Trainee Talk Improving isoform-level eQTL and integrative genetic analyses of breast cancer risk and mammographic density using long-read RNA transcript assemblies